PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00921.1_g00013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 456aa    MW: 48272.7 Da    PI: 9.9156
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00921.1_g00013.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.3e-056284123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C++C+k F r  nL+ H r H
  Rsa1.0_00921.1_g00013.1 62 FVCEICNKGFQRDQNLQLHRRGH 84
                             89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.99E-76184No hitNo description
Gene3DG3DSA:3.30.160.601.5E-56184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9496284IPR007087Zinc finger, C2H2
SMARTSM003550.0176284IPR015880Zinc finger, C2H2-like
PfamPF121717.1E-56284IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SMARTSM00355250103133IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.1E-4126159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.99E-7133158No hitNo description
SMARTSM00355180138158IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MPVDLDNSST VSGEASVSST GNQQNPLPKS AAKKKRNLPG MPDPDSEVIA LSPKTLLATN  60
RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQKSSKEVKK KVYVCPETSC VHHDPSRALG  120
DLTGIKKHFC RKHGEKKWKC DKCSKRYAVV SDWKAHSKIC GTKEYKCDCG TLFSRRDSFM  180
THRAFCDALA EESVRNHTHS KKQSPEILTR KKHVPDPESL TGSNPTASSV APVETRSAKI  240
ISPRAINTKR PESPKTPREI LQEAQEPTGG LNGVFFESSS ASPSIYASPS CSQSLFAPSS  300
SIEPIALGLS ASHGPSFLCS TRFPAQPAMS ATALLQKAAQ MGAASSGGSL LRGLGIVSST  360
SPSVDSLVPN GLALGLPCGG ESSSGLKELM MGNSSVFGPK QTTLDFLGLG RAVGNGGGGG  420
GGPGSTLIGP RGSSIDALAT FGSGEFSGHD IGRRTS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00403DAPTransfer from AT3G50700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532100.0AK353210.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-D18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013697426.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9SCQ60.0IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLA0A078GDB00.0A0A078GDB0_BRANA; BnaC05g34640D protein
STRINGBra036098.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.10.0indeterminate(ID)-domain 2